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发表文献

Ramos, Laia, Javier Del Rey, Gemma Daina, Olga Martinez-Passarell, Mariona Rius, Dolores Tuñón, Mercedes Campillo, Jordi Benet, and Joaquima Navarro. 2013. “Does the S Phase Have an Impact on the Accuracy of Comparative Genomic Hybridization Profiles in Single Fibroblasts and Human Blastomeres?” Fertility and Sterility(December 4): 11. DOI:10.1016/j.fertnstert.2013.10.031.
Inhibition of peroxisome proliferator-activated receptor Γ: a potential link between chronic maternal hypoxia and impaired fetal growth
Julian, Colleen G, Ivana V Yang, Vaughn a Browne, Enrique Vargas, Carmelo Rodriguez, Brent S Pedersen, Lorna G Moore, and David a Schwartz. 2013. “Inhibition of Peroxisome Proliferator-Activated Receptor Γ: a Potential Link Between Chronic Maternal Hypoxia and Impaired Fetal Growth.” FASEB Journal : Official Publication of the Federation of American Societies for Experimental Biology 28 (Published online... Read more »
Broadly permissive intestinal chromatin underlies lateral inhibition and cell plasticity
Kim, Tae-Hee, Fugen Li, Isabel Ferreiro-Neira, Li-Lun Ho, Annouck Luyten, Kodandaramireddy Nalapareddy, Henry Long, Michael Verzi, and Ramesh a Shivdasani. 2014. “Broadly Permissive Intestinal Chromatin Underlies Lateral Inhibition and Cell Plasticity.” Nature (January 12). DOI:10.1038/nature12903.
Mammaprint molecular diagnostics on formalin-fixed, parafin-embedded tissue
Sapino, Anna, Paul Roepman, Sabine C Linn, Mireille H J Snel, Leonie J M J Delahaye, Jeroen van den Akker, Annuska M Glas, et al. (2013). The Journal of Molecular Diagnostics : JMD (December) (December 27): 1–8. DOI:10.1016/j.jmoldx.2013.10.008.
A microarray for assessing transcription from pelagic marine microbial taxa
Shilova IN, Robidart JC, James Tripp H, Turk-Kubo K, Wawrik B, Post AF, Thompson AW, Ward B, Hollibaugh JT, Millard A, Ostrowski M, J Scanlan D, Paerl RW, Stuart R, Zehr JP (2014). A microarray for assessing transcription from pelagic marine microbial taxa. The ISME Journal, 1–16. DOI:10.1038/ismej.2014.1
Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification
Housheng Hansen, He Clifford, A Meyer, Sheng’en Shawn Hu, Mei-Wei Chen, Chongzhi Zang, Yin Liu, Prakash K Rao, Teng Fe, Han Xu, Henry Long, X Shirley Liu & Myles Brown. Nat Methods. 2014 Jan;11(1):73-8. doi: 10.1038/nmeth.2762. Epub 2013 Dec 8.
Large conserved domains of low DNA methylation maintained by Dnmt3a.
Mira Jeong, Deqiang Sun, Min Luo, Yun Huang, Grant A Challen, Benjamin Rodriguez, Xiaotian Zhang, Lukas Chavez, Hui Wang, Rebecca Hannah, Sang-Bae Kim, Liubin Yang, Myunggon Ko, Rui Chen, Berthold Göttgens, Ju-Seog Lee, Preethi Gunaratne, Lucy A Godley, Gretchen J Darlington, Anjana Rao, Wei Li & Margaret A Goodell. Nat Genet. 2014 Jan;46(1):17-23. doi: 10.1038/ng.2836. Epub 2013 Nov 24.
Two methods of whole-genome amplification enable accurate genotyping across a 2320-SNP linkage panel
Barker DL. Hansen MS. Faruqi AF. Giannola D. Irsula OR. Lasken RS. Latterich M. Makarov V. Oliphant A. Pinter JH. Shen R. Sleptsova I. Ziehler W. Lai E. Genome Research. 14(5):901-7, 2004 May
Polymorphisms in the novel gene acyloxyacylhydroxylase (AOAH) are associated with asthma and associated phenotypes
Barnes KC. Grant A. Gao P. Baltadjieva D. Berg T. Chi P. Zhang S. MA, Zambelli-Weiner A. Ehrlich E. Zardkoohi O. Brummet ME. Stockton M. Watkins T. Gao L. Gittens M. Wills-Karp M. Cheadle C. Beck LA. Beaty TH. Becker KG. Garcia JGN. Mathias RA. J. Allergy and Clinical Immunology. 118:70 – 77, 2006.
Comparison of whole genome amplification methods for detecting pathogenic bacterial genomic DNA using microarray
Uda A. Tanabayashi K. Fujita O. Hotta A. Yamamoto Y. Yamada A. Japanese Journal of Infectious Diseases. 60(6):355-61, 2007.
Whole genome amplification of DNA extracted from hair samples: potential for use in molecular epidemiologic studies
Leanza SM. Burk RD. Rohan TE. Cancer Detection & Prevention. 31(6):480-8, 2007.
Rapid Genome Sequencing of RNA Viruses
Mizutani Tetsuya, Endoh Daiji, Okamoto Michiko, Shirato Kazuya, Shmizu Hiroyuki, Arita Minertaro, Fukushi Shuetsu, Saijo Masayuki, Sakai Kouji, Lim Chang Kweng, Ito Mikako, Nerome Reiko, Takasaki Tomohiko, Ishii Koji, Suzuki Tetsuro, Kurane Ichiro, Morikawa Shigeru, Nishimura Hidekazu. Emerging Infectious Diseases, www.cdc.gov/eid, 2007 Feb; 13(2):322-324
Characterization of PGK1 Expression by Stromal Cells Derived from the Tumor Microenvironment in Prostate Cancer Progression
Wang Jianhua, Ying Gigi, Wang Jingchen, Jung Younghun, Lu Jian, Zhu Jiang, Pienta Kenneth J., Taichman Russell S. Cancer Research, 2010 January 15; 70(2): 471-480
Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer
Kim Jung H, Dhanasekaran Saravana M., Prensner John R., Cao Xuhong, Robinson Daniel, Kalyana-Sundaram Shanker, Huang Christina, Shankar Sunita, Jingo Xiaojun, Iyer Matthew, Hu Ming, Sam Lee, Grasso Catherine,. Maher Christopher A, Palanisamy Nallasivam, Mehra Rohit, Kominsky Hal D, Siddiqui Javed, Yu Jindan, Qin Zhaohui S,. Chinnaiyan Arul M. Genome Research. 2011 21: 1028-1041
New genetic associations detected in a host response study to hepatitis B vaccine
Davila S, Froeling FE, Tan A, Bonnard C, Boland GJ, Snippe H, Hibberd ML, Seielstad M. Genes Immun. 2010 Apr;11(3):232-8. DOI: 10.1038/gene.2010.1. Epub 2010 Mar 18.
Noninvasive whole-genome sequencing of a human fetus
Kitzman JO, Snyder MW, Ventura M, Lewis AP, Qiu R, Simmons LE, Gammill HS, Rubens CE, Santillan DA, Murray JC, Tabor HK, Bamshad MJ, Eichler EE,Shendure J. Sci Transl Med. 2012 Jun 6;4(137):137ra76. DOI: 10.1126/scitranslmed.3004323.
Non-invasive analysis of acquired resistance to cancer therapy by sequencing of plasma DNA
Murtaza M, Dawson SJ, Tsui DW, Gale D, Forshew T, Piskorz AM, Parkinson C, Chin SF, Kingsbury Z, Wong AS, Marass F, Humphray S, Hadfield J, Bentley D,Chin TM, Brenton JD, Caldas C, Rosenfeld N. Nature. 2013 May 2;497(7447):108-12. DOI: 10.1038/nature12065. Epub 2013 Apr 7.
Bivalent Chromatin Marks Developmental Regulatory Genes in the Mouse Embryonic Germline In Vivo
Sachs M, Onodera C, Blaschke K, Ebata KT, Song JS, Ramalho-Santos M. Cell Rep. 2013 May 30. pii: S2211-1247(13)00214-3. DOI: 10.1016/j.celrep.2013.04.032. Epub ahead of print.
Whole genome amplification from a single cell: a new era for preimplantation genetic diagnosis
Coskun S, Alsmadi O. Prenat Diagn. 2007 Apr;27(4):297-302. View abstract.
SNP microarray-based 24 chromosome aneuploidy screening is significantly more consistent than FISH
Treff NR, Levy B, Su J, Northrop LE, Tao X, Scott RT Jr. Mol Hum Reprod. 2010 Aug;16(8):583-9. DOI: 10.1093/molehr/gaq039. Epub 2010 May 19.  
OMICS in assisted reproduction: possibilities and pitfalls
Seli E, Robert C, Sirard MA. Mol Hum Reprod. 2010 Aug;16(8):513-30. DOI: 10.1093/molehr/gaq041. Epub 2010 Jun 10.
SNP microarray-based 24 chromosome aneuploidy screening demonstrates that cleavage-stage FISH poorly predicts aneuploidy in embryos that develop to morphologically normal blastocysts
Northrop LE, Treff NR, Levy B, Scott RT Jr. Mol Hum Reprod. 2010 Aug;16(8):590-600. DOI: 10.1093/molehr/gaq037. Epub 2010 May 17.
Validation of microarray comparative genomic hybridization for comprehensive chromosome analysis of embryos
Gutiérrez-Mateo C, Colls P, Sánchez-García J, Escudero T, Prates R, Ketterson K, Wells D, Munné S. Fertil Steril. 2011 Mar 1;95(3):953-8. DOI: 10.1016/j.fertnstert.2010.09.010. Epub 2010 Oct 25.
Frequency of aneuploidy related to age in porcine oocytes
Hornak M, Jeseta M, Musilova P, Pavlok A, Kubelka M, Motlik J, Rubes J, Anger M. PLoS One. 2011 Apr 27;6(4):e18892. DOI: 10.1371/journal.pone.0018892. 2010
Completely phased genome sequencing through chromosome sorting
Yang H, Chen X, Wong WH. Proc Natl Acad Sci U S A. 2011 Jan 4;108(1):12-7. DOI: 10.1073/pnas.1016725108. Epub 2010 Dec 15.
Selection of single blastocysts for fresh transfer via standard morphology assessment alone and with array CGH for good prognosis IVF patients: results from a randomized pilot study
  Yang Z, Liu J, Collins GS, Salem SA, Liu X, Lyle SS, Peck AC, Sills ES, Salem RD. Mol Cytogenet. 2012 May 2;5(1):24.  DOI: 10.1186/1755-8166-5-24.
Diminished effect of maternal age on implantation after preimplantation genetic diagnosis with array comparative genomic hybridization.
Harton GL, Munné S, Surrey M, Grifo J, Kaplan B, McCulloh DH, Griffin DK, Wells D; PGD Practitioners Group. Fertility and Sterility. 2013 Sept 12;. DOI: 10.1016/j.fertnstert.2013.07.2002
Heterogeneity of estrogen receptor expression in circulating tumor cells from metastatic breast cancer patients
Babayan A, Hannemann J, Spötter J, Müller V, Pantel K, & Joosse Sa. PloS one. 2013;8(9):e75038. DOI:10.1371/journal.pone.0075038.
Selection of single blastocysts for fresh transfer via standard morphology assessment alone and with array CGH for good prognosis IVF patients: results from a randomized pilot study
Yang Z, Liu J, Collins GS, Salem SA, Liu X, Lyle SS, Peck AC, Sills ES, Salem RD. Mol Cytogenet. 2012 May 2;5(1):24.  DOI: 10.1186/1755-8166-5-24.
Single-cell paired-end genome sequencing reveals structural variation per cell cycle
Voet T, et al. Nucleic Acids Research. 2013, 1–20.  DOI:10.1093/nar/gkt345.
Microarray-CGH for the assessment of aneuploidy in human polar bodies and oocytes
Jaroudi S, Wells D. Methods in molecular biology. 2013;957:267-83.  DOI: 10.1007/978-1-62703-191-2_19.
The future is now: single-cell genomics of bacteria and archaea
Blainey PC. FEMS Microbiology Reviews. 2013;37:407–427.  DOI: 10.1111/1574-6976.12015.
The origin and impact of embryonic aneuploidy
Fragouli E, Alfarawati S, Spath K, Jaroudi S, Sarasa J, Enciso M, Wells D. Human Genetics. 2013 Apr 26.  View abstract.
Identification of chromosomal errors in human preimplantation embryos with oligonucleotide DNA microarray
Liang L, Wang CT, Sun X, Liu L, Li M, Witz C, Wang W-H. PloS one. 2013;8(4):e61838. DOI 10.1371/journal.pone.0061838.
Chromosomal integrity of human preimplantation embryos at different days post fertilization
Dekel-Naftali M, Aviram-Goldring A, Litmanovitch T, Shamash J, Yonath H, Hourvitz A, Yung Y, Brengauz M, Schiff E, Rienstein S. Journal of Assisted Reproduction and Genetics. 2013 May;30(5):633–648.  DOI 10.1007/s10815-013-9988-y.
A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities
Leung K, Zahn H, Leaver T, Konwar KM, Hanson NW, Pagé AP, Lo CC, Chain PS, Hallam SJ, Hansen CL. Proc Natl Acad Sci U S A. 2012 May 15;109(20):7665-70. DOI: 10.1073/pnas.1106752109. Epub 2012 Apr 30.
Detection of ≥1Mb microdeletions and microduplications in a single cell using custom oligonucleotide arrays
Weimin Bi1, Amy Breman1, Chad A. Shaw1, Pawel Stankiewicz1, Tomasz Gambin1,2, Xinyan Lu1, Sau Wai Cheung1, Laird G. Jackson3, James R. Lupski1, Ignatia B. Van den Veyver1,4  and Arthur  L. Beaudet1* Prenatal Diagnosis 2012, 32, 10-20

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